Molecular Biology Guide: References

  1. Agarwal N et al. 1991. Sequence analysis, expression and chromosomal localization of a gene, isolated from a subtracted human retina cDNA library, that encodes an insulin-like growth factor binding protein (IGFBP2). Exp Eye Res. 52:549-61.
  2. An J, Sommer JA, Shore GD, Williamson JE, Brenneman RA, Louis EE. 2004. Characterization of 20 microsatellite marker loci in the west Indian rock iguana (Cyclura nubile). Conservation Genetics. 5:121-25.
  3. Black EP, Hallstrom T, Dressman HK, West M, Nevins JR. 2005. Distinctions in the specificity of E2F function revealed by gene expression signatures. Proc Nat Acad Sci USA. 102(44):15948-53.
  4. Carriero F, Fontanazza G, Cellini F, Giorio G. 2002. Identification of simple sequence repeats (SSRs) in olive (Olea europaia L.). Theor Appl Genet. 104:301-07.
  5. Choi HW, Lemaux PG, Cho M-J. 2002. Use of fluorescence in situ hybridization for gross mapping of transgenes and screening for homozygous plants in transgenic barley (Hordeum vulgare L.). Theor Appl Genet. 106:92-100.
  6. Choy JS, Tobe BTD, Huh JH, Kron SJ. 2001. Yng2g-dependent NuA4 histone H4 acetylation activity is required for mitotic and meiotic progression. J Biol Chem. 276(47):43653-62.
  7. Covi JA, Hand SC. 2005. V-ATPase expression during development of Artemia franciscana embryos: potential role for proton gradients in anoxia signaling. J Exp Biol. 208:2783-98.
  8. Cruz P, Ibarra AM, Fiore-Amaral G, Galindo-Sanchez CE, Mendoza-Carrion G. 2005. Isolation of microsatellite loci in green abalone (Haliotis fulgens) and cross-species amplification in two other North American red (Haliotis rufescens) and pink (Haliotis corrugata) abalones. Mol Ecol Notes 5:857-59.
  9. Derocq J-M, Jbilo O, Bouaboula M, Segui M, Clere C, Casellas P. 2000. Genomic and functional changes induced by the activation of the peripheral cannabinoid receptor CB2 in the promyelocytic cells HL-60. J Biol Chem. 275(21):15621-28.
  10. Duncan MK, Kozmik Z, Cveklova K, Piatigorsky J, Cvekl A. 2000. Overexpression of PAX6(5a) in lens fiber cells results in cataract and upregulation of (alpha)5(beta)1 integrin expression. J Cell Sci. 113:3173-85.
  11. Fule T, Mathe M, Suba Z, Csapo Z, Szarvas T, Tatrai P, Paku S, Kovalszky I. 2006. The presence of human papillomavirus 16 in neural structures and vascular endothelial cells. Virology. 348:289-96.
  12. Funhoff AM, van Nostrum CF, Lok MC, Kruijtzer JAW, Crommelin DFA, Hennink WE. 2005. Cationic polymethacrylates with covalently linked membrane destabilizing peptides as gene delivery vectors. J Controlled Release. 101:233-46.
  13. Grosse S, Aron Y, Thevenot G, Francois D, Monsigny M, Fajac I. 2005. Potocytosis and cellular exit of complexes as cellular pathways for gene delivery by polycations. J Gene Med. 7:1275-86.
  14. Grosse S, Thevenot G, Monsigny M, Fajac I. 2006. Which mechanism for nuclear import of plasmid DNA complexed with polyethylenimine derivatives? J Gene Medicine 8(7):845-51.
  15. Gruber HE, Ingram JA, Leslie K, Norton HJ, Hanley EN. 2003. Cell shape and gene expression in human intervertebral disc cells: in vitro tissue engineering studies. Biotechnic and Histochem. 78(2):109-17.
  16. Hall MO, Obin MS, Heeb MJ, Burgess BL, Abrams TA. 2005. Both protein S and Gas6 stimulate outer segment phagocytosis by cultured rat retinal pigment epithelial cells. Exp Eye Res. 81(5):581-91.
  17. Haruyama T, Sakai T, Matsuno K. 2005. Protein layer coating method on metal surface by electrochemical process through genetical introduced tag. Biomaterials. 26(24):4944-7.
  18. Harvard C, Malenfant P, Koochek M, Creighton S, Mickelson ECR, Holden JJA, Lewis MES, Rajcan-Separovic E. 2005. A variant Cri du Chat phenotype and autism spectrum disorder in a subject with de novo cryptic microdeletions involving 5p15.2 and 3p24.3-25 detected using whole genomic array CGH. Clin Genet. 67:341-51.
  19. Hiromura M, Suizu F, Narita M, Kinowaki K, Noguchi M. 2006. Identification of NBRE (nerve growth factor responsive element) of the TCL1 promoter as a novel negative regulatory element. J Biol. Chem. 281:27753-64.
  20. Hirota K, Nodasaka Y, Orikasa Y, Okuyama H, Yumoto I. 2005. Shewanella pneumatophori sp. nov., an eicosapentaenoic acid-producing marine bacterium isolated from the intestines of Pacific mackerel (Pneumatophorus japonicus). Int J of Systematic Evol Microbiol. 55:2355-9.
  21. Jung J, Lee I, Kim W. 2006. Isolation and characterization of polymorphic microsatellite markers of Anopheles sinensis, a malaria vector mosquito in the East Asia region. Mol Ecol Notes 6(4):1272-74.
  22. Kandasamy K, Joseph K, Subramaniam K, Raymond JR, Tholanikunnel BG. 2005. Translational control of β2-adrenergic receptor mRNA by T-cell-restricted intracellular antigen-related protein. J Biol Chem. 280(3):1931-43.
  23. Kandpal RP, Kandpal G, Weissman SM. 1994. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proc Natl Acad Sci USA. 91(1):88-92.
  24. Kandpal RP, Ward DC, Weissman SM. 1990. Selective enrichment of a large size genomic DNA fragment by affinity capture: an approach for genome mapping. Nucleic Acids Res. 18:1789-95.
  25. Knezevic V, Leethanakul C, Bichsel VE, Worth JM, Prabhu VV, Gutkind JS, Liotta LA, Munson PJ, Petricoin EF, Krizman DB. 2001. Proteomic profiling of the cancer microenvironment by antibody arrays. Proteomics. 1(10):1271-78.
  26. Korinth D, Donhuijsen K, Bockmuhl U, Petersen I. 2004. PHOTOPROBE® biotin: An alternative method for labeling archival DNA for comparative genomic hybridization. Cell Oncol. 26:329-34.
  27. Korinth D, Pacyna-Gengelbach M, Deutchmann N, Hattenberger S, Bockmuhl U, Dietel M, Schroeder H-G, Donhuijsen K, Petersen I. 2005. Chromosomal imbalances in wood dust-related adenocarcinomas of the inner nose and their associations with pathological parameters. J Pathol. 207:207-15.
  28. Kwak S-E, Kim J-E, Kim D-S, Won M-H, Choi H-C, Kim Y-I, Song H-K, Choi S-Y, Kang T-C. 2005. Differential effects of vigabatrin and zonisamide on the neuropeptide Y system in the hippocampus of seizure prone gerbil. Neuropeptides 39(5):507-13.
  29. Lavania UC, Yamamoto M, Mukai Y. 2003. Extended chromatin and DNA fibers from active plant nuclei for highresolution FISH. J Histochem Cytochem. 51(10):1249-53.
  30. Lewis SM, Veyrier A, Ungureanu NH, Bonnal S, Vagner S, Holcik M. 2007. Subcellular relocalization of a trans-acting factor regulates XIAP IRES-dependent translation. MBC 18(4):1302-11.
  31. Liu Z, Zhang B, Wei F, Li M. 2005. Isolation and characterization of microsatellite loxi for the red panda Ailurus fulgens. Mol Ecol Notes 5:27-29.
  32. Lonskaya I, Potaman VN, Shlyakhtenko LS, Oussatcheva EA, Lyubchenko YL, Soldatenkov VA. 2005. Regulation of poly(ADP-ribose) polymerase-1 by DNA structure-specific binding. J Biol Chem. 280(17):17076-83.
  33. Marsden S, Nardelli M, Linder P, McCarthy JEG. 2006. Unwinding single RNA molecules using helicases involved in eukaryotic translation initiation. JMB. 361(2):327-35.
  34. Menze MA, Hutchinson K, Laborde SM, Hand S. 2005. Mitochondrial permeability transition in the crustacian Artemia franciscana: absence of a calcium-regulated pore in the face of profound calcium storage. Am J Physiol Regul Integr Comp Physiol. 289:68-76.
  35. Nan X, Tonary AM, Stolow A, Xie XS, Pezacki JP. 2006. Intracellular imaging of HCV RNA and cellular lipids by using simultaneous two-photon fluorescence and coherent antiStokes Raman scattering microscopies. ChemBioChem. 7:1895-97.
  36. Noestheden M, Hu Q, Tonary AM, Tay L-L, Pezacki JP. 2007. Evaluation of chemical labeling strategies for monitoring HCV RNA using vibrational microscopy. Org Biomol Chem. 5:2380-89.
  37. Okuda K, Nakamura T, Sugita M, Shimizu T, Shikanai T. 2006. A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J Biol Chem. 281(49):37661-67.
  38. Ponnuraj EM, Hayward AR. 2002. Requirement for TNFTnfrsf1 signalling for sclerosing cholangitis in mice chronically infected by Cryptosporidium parvum. Clin Exp Immunol. 128:416-20.
  39. Puri V, Puri S, Svojanovsky SR, Mathur S, Macgregor RR, Klein RM, Welch KMA, Rerman NEJ. 2006. Effects of estrogen on trigeminal ganglia in culture: implications for hormonal effects on migraine. Cephalalgia. 26(1):33-42.
  40. Qian Y, Venkatraj J, Barhoumi R Pal R, Datta A, Wild JR, Tiffany-Castiglioni E. 2007. Comparative non-cholinergic neurotoxic effects of paraoxon and diisopropyl fluorophosphates (DFP) on human neuroblastoma and astrocytoma cell lines. Toxicol Appl Pharmacol. 219(2-3):162-71.
  41. Rehner SA and Buckley EP. 2003. Isolation and characterization of microsatellite loci from the entomopathogenic fungus Beauveria bassiana (Ascomycota: Hypocreales). Mol Ecol Notes. 3:409-11.
  42. Rejman J, Wagenaar A, Engberts J, Hoekstra D. 2004. Characterization and transfection properties of lipoplexes stabilized with novel exhangeable polyethylene glycol-lipid conjugates. Biochem Biophys Acta. 1660:41-52.
  43. Rola R, Zou Y, Huang T-T, Fishman K, Baure J, Rosi S, Milliken H, Limoli CL, Fike JR. 2007. Lack of extracellular superoxide dismutase (EC-SOD) in the microenvironment impacts radiation-induced changes in neurogenesis. Free Radical Biol and Med. 42:1133-45.
  44. Sagan SM, Rouleau Y, Leggiadro C, Supekova L, Schultz PG, Su AI, Pezacki JP. 2006. The influence of cholesterol, and lipid metabolism on host cell structure and hepatitis C virus replication. Biochem Cell Biol. 84:67-79.
  45. Sakurai F, Inoue R, Nishino Y, Okuda A, Matsumoto O, Taga T, Yanashita F, Takakura Y, Hashida M. 2000. Effect of DNA/liposome mixing ratio on the physicochemical characteristics, cellular uptake and intracellular trafficking of plasmid DNA/cationic liposome complexes and subsequent gene expression. J Control Release. 66:255-69.
  46. Sambrook J, Fritsch EF, and Maniatis T. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  47. Sato T, Furukawa K. 2007. Sequential action of ETS-1 and SP1 for gene-activation of human ß-1,4-galactosyltransferase V involved in abnormal glycoslyation characteristic of cancer cells. J Biol Chem. 282:27702-12.
  48. Savlik M, Polackova L, Szotakova B, Lamka J, Velik J, Skalova L. 2007. Activities of biotransformation enzymes in pheasant (Phasianus colchicus) and their modulation by in vivo administration of mebendazole and flubendazole. Res Vet Sci. 83:20-26.
  49. Shimada S, Sunagawa M, Hanashiro K, Nakamura M, Kosugi T. 2007. RNA interference targeting embryonic myosin heavy chain isoform inhibited mRNA expressions of phenotype markers in rabbit cultured vascular smooth muscle cells. Heart Vessels. 22:41-47.
  50. Speranza P, Malesetti M. 2007. Nuclear and cytoplasmic microsatellite markers for the species of the Dilatata group of Paspalum (Poaceae). Plant Genetic Resources: Characterization and Utilization 5(1):14-26.
  51. Swaroop A, Xu J, Agarwal N, Weissman SM. 1991. A simple and efficient cDNA library subtraction procedure: isolation of human retina-specific cDNA clones. Nucleic Acids Res. 19:1954.
  52. Terhune SS, Schroer J, Shenk T. 2004. RNAs are packaged into human cytomegalovirus virions in proportion to their intracellular concentration. J Virol. 78(19):10390-98.
  53. Tremblay JJ, Viger RS. 2003. Transcription factor GATA- 4 is activated by phosphorylation of serine 261 via the cAMP/Protein Kinase A signaling pathway in gonadal cells. J Biol Chem. 278:22128-35.
  54. Trillo-Pazos G., Diamanturos A, Rislove L, Menza T, Chao W, Belem P, Sadiq S, Morgello S, Sharer L, Volsky DJ. 2003. Detection of HIV-1 DNA in microglia/macrophages, astrocytes and neurons isolated from brain tissue with HIV-1 encephalitis by laser capture microdissection. Brain Pathol. 13:144-54.
  55. Tsang SH, Woodruff ML, Janisch KM, Cilluffo MC, Farber DB, Fain GL. 2007. Removal of phosphorylation sites of γ subunit of phosphodiesterase 6 alters rod light response. J Physiol. 579(2):303-12.
  56. Wemmert S, Romeike BFM, Ketter R, Steudel W, Zang KD, Urbschat S. 2006. Intratumoral genetic heterogeneity in pilocytic astrocytomas revealed by CGH-analysis of microdissected tumor cells and FISH on tumor tissue section. Int J Oncol. 28:353-60.
  57. Wettstein PJ, Borson ND, Park, JG, McNallan KT, Reed AM. 2005. Cysteine-tailed class I-binding peptides bind to CpG adjuvant and enhance primary CTL responses. J Immunol. 175: 3681-89.
  58. Wiethoff CM, Koe JG, Koe GS, Middaugh CR. 2004. Compositional effects of cationic lipid/DNA delivery systems on transgene expression in cell culture. J Pharm Sci. 93(1):108-23.
  59. Will C, Schewe C, Schluns K, Petersen I. 2006. HPV typing and CGH analysis for the differentiation of primary and metastatic squamous cell carcinomas of the aerodigestive tract. Cellular Oncol. 28(3):97-105.
  60. Wu WWH, Sun Y-HB, Panté N. 2007. Nuclear import of influenza A viral ribonucleoprotein complexes is mediated by two nuclear localization sequences on viral nucleoprotein. Virology J. 4:49-60.
  61. Yasuda K, Ogawa Y, Yamane I, Nishikawa M, Takakura Y. 2005. Macrophage activation by a DNA/cationic liposome complex requires endosomal acidification and TLR9-dependent and –independent pathways. J Leukocyte Biol. 77:71-9.
  62. Zaonarivelo JR, Sommer JA, Shore GE, McGuire SM, Engberg SE, Brienneman RA, Louis EE. 2007. Isolation and characterization of 20 microsatellite marker loci from the Indri (Indri indri) genome. Mol Ecol Notes 7(1):25-28.