Fluorescence and enzyme-based detection reagents from Vector Laboratories are ideal for in situ hybridization (ISH) applications, because of their high affinity, high sensitivity, and low background.

Fluorescence ISH. Choosing a detection method frequently depends on the abundance and accessibility of the target. Some targets, such as repetitive sequences, can be directly visualized with a fluorescently labeled probe. See Figure 1.

Less abundant targets may require a method with greater sensitivity. In these cases, the fluorescent label on the probe can serve as a tag. Signal amplification is achieved by binding a biotinylated antibody to this tag followed by a fluorochromelabeled streptavidin or avidin. See Figure 2.

Additional signal amplification can be achieved using Biotinylated Anti-Streptavidin or Biotinylated Anti-Avidin antibodies. These antibodies bind to streptavidin or avidin, respectively, through their antigen binding sites and also through the biotin residues. After the application of the fluorochrome-labeled streptavidin or avidin, the signal is enhanced by incubation with either Biotinylated Anti-Streptavidin or Biotinylated Anti-Avidin antibody, respectively. This step is followed by a second incubation with fluorochrome-labeled streptavidin or avidin. This procedure results in the introduction of a greater number of fluorochromes at the target site. See Figure 3.

Enzyme-based ISH. Probes labeled with biotin, fluorochrome, or DNP can be detected with an antibody that is directly conjugated to either peroxidase or alkaline phosphatase in a “one-step” detection procedure. A wide choice of substrates is available for these enzyme conjugates. For a significant increase in sensitivity, an ImmPRESS™ peroxidase polymer, biotin/streptavidin or biotin/ avidin based systems can also be employed for detecting these labels.

Multiple Label ISH and IHC/ISH. Multiple probes with different labels can be hybridized simultaneously. After hybridization, the labeled probes can be detected sequentially using the same strategies employed for single probe detection. It is also possible to perform ISH and IHC (immunohistochemistry) in the same tissue section. This is usually done sequentially. Antigen detection is usually performed first due to possible loss of antigenicity from the harsh conditions of hybridization. After localization of the antigen with a precipitating substrate, the ISH probe is hybridized and detected. The peroxidase substrates, DAB (SK-4100) or ImmPACT™ DAB (SK-4105), or the alkaline phosphatase substrates, Vector® Red (SK-5100) or BCIP/NBT (SK-5400) can be used first for localization of the antigen because the reaction products of these substrates remain stable throughout subsequent ISH procedures.
In Situ Hybridization Continued